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i5k Workspace@NAL
U.S. Department of Agriculture
  1. Genomeannotation
  2. Agrilus Planipennis Community Manual Annotations

Agrilus planipennis community manual annotations

Summary
Type
Genome annotation
Name
Agrilus planipennis community manual annotations
Description

Agrilus planipennis community annotators performed manual annotation updates on Agrilus planipennis Genome Assembly 1.0 (10.15482/USDA.ADC/1503806) via the Apollo software (https://github.com/gmod/apollo) at the i5k Workspace@NAL (https://i5k.nal.usda.gov). These annotations were reviewed by the i5k Workspace@NAL and lifted over to assembly Apla_2.0 (GCF_000699045.2) via LiftOff v1.6.3 (https://github.com/agshumate/Liftoff). Overlaps with RefSeq annotations were computed using gff3_merge (https://github.com/NAL-i5K/GFF3toolkit). Fasta sequences were generated using gff3_to_fasta (https://github.com/NAL-i5K/GFF3toolkit).
Program, Pipeline, Workflow or Method Name
Manual annotation, LiftOff v1.6.3, GFF3toolkit v2.1.0
Program Version
n/a
Source Name
Agrilus planipennis genome assembly Apla_2.0 (GCF_000699045.2)
Data Source URI

https://i5k.nal.usda.gov/data/Arthropoda/agrpla-%28Agrilus_planipennis%…
Organism
Agrilus planipennis
Database Cross References
Database Accession
Ag Data Commons 25076114.v1