JAMg Consensus Gene Set v1 | i5k Workspace@NAL

Summary

Type	Genome annotation
Name	JAMg Consensus Gene Set v1
Description	Consensus gene set generated by Alexie Papanicolaou and Just_Annotated_My_genome – using 3 publicly available RNA-Seq libraries and several private ones (gut and reproductive tissues of adults) from Oberhofer. Method is based on i) de-novo predictions with Augustus, Glimmer, SNAP, GeneMark, ii) RNA-Seq using Trinity RNASeq de-novo and Trinity Genome Guided, iii) PASA2 RNASeq integration and iv) Evidence Modeller. Full method available on http://jamg.sourceforge.net
Program, Pipeline, Workflow or Method Name	JAMg
Program Version	NA
Source Name	Ceratitis capitata whole genome assembly, NCBI release
Organism	Ceratitis capitata
Publication	Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, Friedrich M, Gasperi G, Geib S, Georgakilas G, Gibbs RA, Giers SD, Gomulski LM, González-Guzmán M, Guillem-Amat A, Han Y, Hatzigeorgiou AG, Hernández-Crespo P, Hughes DS, Jones JW, Karagkouni D, Koskinioti P, Lee SL, Malacrida AR, Manni M, Mathiopoulos K, Meccariello A, Munoz-Torres , Murali SC, Murphy TD, Muzny DM, Oberhofer G, Ortego F, Paraskevopoulou MD, Poelchau M, Qu J, Reczko M, Robertson HM, Rosendale AJ, Rosselot AE, Saccone G, Salvemini M, Savini G, Schreiner P, Scolari F, Siciliano P, Sim SB, Tsiamis G, Ureña E, Vlachos IS, Werren JH, Wimmer EA, Worley KC, Zacharopoulou A, Richards S, Handler AM. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.. Genome biology. 2016 09 22; 17(1):192.