Leptinotarsa decemlineata annotations lepdec_OGSv1.2

Summary

Type	Genome annotation
Name	Leptinotarsa decemlineata annotations lepdec_OGSv1.2
Description	A MAKER2 gene set was merged with Apollo-curated manual annotations and miRNA annotations using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit/). This gene set, OGSv1.1 was subsequently remapped to an updated genome assembly, Leptinotarsa decemlineata genome assembly Ldec_2.0 (GCF_000500325.1), using remap-gff3 (https://github.com/NAL-i5K/remap-gff3).
Program, Pipeline, Workflow or Method Name	MAKER2, manual annotation, GFF3toolkit, remap-gff3
Program Version	NA
Source Name	Leptinotarsa decemlineata genome assembly Ldec_2.0 (GCF_000500325.1)
Data Source URI	https://i5k.nal.usda.gov/data/Arthropoda/lepdec-%28Leptinotarsa_decemli…
Organism	Leptinotarsa decemlineata
Publication	Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, Engsontia P, Friedrich M, García-Robles I, Gibbs RA, Goswami C, Grapputo A, Gruden K, Grynberg M, Henrissat B, Jennings EC, Jones JW, Kalsi M, Khan SA, Kumar A, Li F, Lombard V, Ma X, Martynov A, Miller NJ, Mitchell RF, Munoz-Torres M, Muszewska A, Oppert B, Palli SR, Panfilio KA, Pauchet Y, Perkin LC, Petek M, Poelchau MF, Record É, Rinehart JP, Robertson HM, Rosendale AJ, Ruiz-Arroyo VM, Smagghe G, Szendrei Z, Thomas GWC, Torson AS, Vargas Jentzsch IM, Weirauch MT, Yates AD, Yocum GD, Yoon JS, Richards S. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).. Scientific reports. 2018 01 31; 8(1):1931.