Cimex lectularius Official Gene Set OGSv1.3

Summary

Tripal data table
Type	Genome annotation
Name	Cimex lectularius Official Gene Set OGSv1.3
Status	Current
Description	OGS v1.2 was mapped to genome assembly Clec_2.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000648675.2) using https://github.com/NAL-i5K/coordinates_conversion and subsequently https://github.com/NAL-i5K/remap-gff3, resulting in OGSv1.3 The full OGSv1.2 dataset is accessible at the Ag Data Commons: https://doi.org/10.15482/USDA.ADC/1196762 The full datasets for OGSv1.2 and OGSv1.3 are accessible at VEuPathDB: https://vectorbase.org/common/downloads/Legacy%20VectorBase%20Files/Cim… Additional information about OGSv1.3 is accessible at VEuPathDB: https://nov2020-metazoa.ensembl.org/Cimex_lectularius/Info/Annotation/ Official Gene Sets OGSv1.1 and OGSv1.0 were never publicly released.
Program, Pipeline, Workflow or Method Name	remap-gff3
Program Version	NA
Source Name	Cimex lectularius genome assembly Clec_2.1 (GCF_000648675.2)
Data Source URI	https://i5k.nal.usda.gov/data/Arthropoda/cimlec-%28Cimex_lectularius%29…
Organism	Cimex lectularius
Publication	Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods.. Genome biology. 2020 01 23; 21(1):15. Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, Resnik V, Wernig S, Menegazzi P, Wegener C, Peschel N, Hendershot JM, Blenau W, Predel R, Johnston PR, Ioannidis P, Waterhouse RM, Nauen R, Schorn C, Ott MC, Maiwald F, Johnston JS, Gondhalekar AD, Scharf ME, Peterson BF, Raje KR, Hottel BA, Armisén D, Crumière AJJ, Refki PN, Santos ME, Sghaier E, Viala S, Khila A, Ahn SJ, Childers C, Lee CY, Lin H, Hughes DST, Duncan EJ, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Wheeler D, Panfilio KA, Vargas Jentzsch IM, Vargo EL, Booth W, Friedrich M, Weirauch MT, Anderson MAE, Jones JW, Mittapalli O, Zhao C, Zhou JJ, Evans JD, Attardo GM, Robertson HM, Zdobnov EM, Ribeiro JMC, Gibbs RA, Werren JH, Palli SR, Schal C, Richards S. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.. Nature communications. 2016 Feb 02; 7:10165.

Database Cross References

Tripal data table
Database	Accession
Ag Data Commons	1196762