Annotation v0.5.4 of the Homalodisca vitripennis assembly using MAKER (Baylor College of Medicine)

Summary

Type	Genome annotation
Name	Annotation v0.5.4 of the Homalodisca vitripennis assembly using MAKER (Baylor College of Medicine)
Status	Current
Description	The MAKER automated annotation software was run using RNA-Seq, protein homology from a wide taxonomic range, and CEGMA proteins as external evidence. Additional post-processing of the gene predictions was performed, creating Annotation v0.5.3 of the Homalodisca vitripennis assembly using MAKER (Baylor College of Medicine). Consensus gene models from the MAKER automated annotation pipeline were lifted over to the latest genome assembly, UT_GWSS_2.1 (GCF_021130785.1), using LiftOff v1.6.3.
Program, Pipeline, Workflow or Method Name	MAKER, LiftOff v1.6.3
Program Version	NA
Source Name	Homalodisca vitripennis genome assembly UT_GWSS_2.1 (GCF_021130785.1)
Data Source URI	https://i5k.nal.usda.gov/data/Arthropoda/homvit-%28Homalodisca_vitripen…
Organism	Homalodisca vitripennis
Publication	Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods.. Genome biology. 2020 01 23; 21(1):15.