Eurytemora affinis proper
Summary
| Type |
organism
|
|---|---|
| Genus |
Eurytemora
|
| Species |
affinis
|
| Genome Browser | |
| Description |
Eurytemora affinis proper comprises the Eurytemora species complex European clade (15 chromosomes), which is distributed in Europe, including the Baltic Sea, North Sea, and European estuaries. Eurytemora affinis is most commonly found to be between 1.2 - 1.3mm in length, where the females are typically around 1.1-1.5mm and males 1.0-1.5mm. Like any other copepod, their anatomy is broken down into two main sections: the prosome (main body) and urosome (tail). Source: https://en.wikipedia.org/wiki/Eurytemora_affinis Note that the previous version of the Eurytemora affinis genome was actually from a different species, Eurytemora carolleeae. Information about the previous assembly is organized under the Eurytemora carolleeae project page, https://i5k.nal.usda.gov/organism/836560. |
| Publication |
Du Z, Wirtz J, Zhou YJ, Jenstead A, Opgenorth T, Puls A, Meyer C, Gelembiuk GW, Lee CE. Genome architecture evolution in an invasive copepod species complex. Nature communications. 2025 Nov 21; 16(1):10312.
|
| Image Credit |
organism
|
Assembly Stats
| Contig N50 |
750.9 kb |
|---|---|
| GC Content |
33.5% |
| Scaffold N50 |
42.6 Mb |
Other Information
| Community Contact |
Carol Lee, University of Wisconsin-Madison |
|---|---|
| Links |
Analyses
| Name | Program | Status Sort descending |
|---|---|---|
| Eurytemora affinis genome assembly ASM5291489v1 (GCA_052914895.1) | NextDenovo v. 2.3.1; NextPolish v. 1.4.1; Purge_dups v. 1.2.6; Juicer v. 1.6; 3D-DNA v. 180922; Juicebox v. 1.91 | Current |
| Functional annotation of Eurytemora affinis ASM5291489v1 GSv1.0 | AgBase functional annotation pipeline | Current |
| Eurytemora affinis ASM5291489v1 GSv1.0 | MAKER | Current |