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Anoplophora glabripennis

Summary

Tripal data table
Type	organism
Genus	Anoplophora
Species	glabripennis
Common Name	Asian long-horned beetle
Genome Browser	JBrowse Viewer for Anoplophora glabripennis
Description	The Asian long-horned beetle (Anoplophora glabripennis) (ALB) is an invasive pest from Asia that came to Canada, the United States and Europe concealed in solid wood packing material. It is a serious threat to deciduous hardwood trees in urban, suburban, and forested parts of the country. Larvae bore into a tree's heartwood, damaging and eventually killing the tree. If it became widely established in North America (it is already established locally), it could be one of the most destructive and costly invasive species ever (USDA Program Aid No.1655). This is target of current USDA eradication efforts. These beetles are large (1-1.5 inches), and one beetle can provide more than 10 micrograms of DNA. Specimens in North America are all relatively closely related. Suitable specimens are available for sequencing. All files were generated by the Baylor College of Medicine's i5k pilot project. The original source for these files is here. Please cite the following publication when using the A. glabripennis genome and annotations: McKenna, D. D., Scully, E. D., Pauchet, Y., et al. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant interface. Genome Biology 2017 17(1), 227. DOI: 10.1186/s13059-016-1088-8 Genome update. Previously, the i5k Workspace@NAL hosted Whole genome assembly of Anoplophora glabripennis, Anoplophora glabripennis Official Gene Set v1.2, and Functional annotation of Anoplophora glabripennis OGS v1 2. The assembly and annotations have updated to the most recent assembly, Anoplophora glabripennis genome assembly Agla_2.0 (GCF_000390285.2) (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000390285.2/), NCBI Anoplophora glabripennis Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Anoplophora_glabripennis/101/), and Functional annotation of NCBI Anoplophora glabripennis Annotation Release 101 (https://i5k.nal.usda.gov/data/Arthropoda/anogla-%28Anoplophora_glabripennis%29/Agla_2.0/3.Additional%20Gene%20Sets%20and%20Annotation%20Projects/).
Publication	Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods. . Genome biology. 2020 01 23; 21(1):15. McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, Calla B, Chao H, Childers AK, Childers C, Clarke DJ, Cohen L, Demuth JP, Dinh H, Doddapaneni H, Dolan A, Duan JJ, Dugan S, Friedrich M, Glastad KM, Goodisman MA, Haddad S, Han Y, Hughes DS, Ioannidis P, Johnston JS, Jones JW, Kuhn LA, Lance DR, Lee CY, Lee SL, Lin H, Lynch JA, Moczek AP, Murali SC, Muzny DM, Nelson DR, Palli SR, Panfilio KA, Pers D, Poelchau MF, Quan H, Qu J, Ray AM, Rinehart JP, Robertson HM, Roehrdanz R, Rosendale AJ, Shin S, Silva C, Torson AS, Jentzsch IM, Werren JH, Worley KC, Yocum G, Zdobnov EM, Gibbs RA, Richards S. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. . Genome biology. 2016 11 11; 17(1):227.
Organism Image
Image Credit	Appleby James, U.S. Fish and Wildlife Service. View Source.

Assembly Stats

Tripal data table
Contig N50	NA
GC Content	32.72
Scaffold N50	678234

Other Information

Other Information Table
Community Contact	Duane McKenna, University of Memphis
Links	Anoplophora glabripennis @ Baylor College of Medicine NCBI BioProject Download Data

Analyses

Tripal data table
Name	Program	Status Sort descending
Anoplophora glabripennis Official Gene Set OGSv1.3	remap-gff3	Current
Anoplophora glabripennis genome assembly Agla_2.0 (GCF_000390285.2)	AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c	Current
NCBI Anoplophora glabripennis Annotation Release 101	NCBI Eukaryotic annotation pipeline	Current
Functional annotation of Anoplophora glabripennis OGS v1 2	AgBase functional annotation pipeline	Current
Functional annotation of NCBI Anoplophora glabripennis Annotation Release 101	AgBase functional annotation pipeline	Current
Anoplophora glabripennis Official Gene Set v1.2	Baylor College of Medicine and National Agricultural Library Official Gene Set generation	Supressed
Whole genome assembly of Anoplophora glabripennis	Baylor College of Medicine genome assembly pipeline	Supressed
BCM annotation of the Anoplophora glabripennis assembly using Maker and additional analyses	MAKER	Supressed